QSeq Tool name | QSeq |
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URL | http://www.dnastar.com/t-nextgen-qseq.aspx
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Important features | 1. QSeq is DNASTAR's Next-Gen application for RNA-Seq, ChIP-Seq, and miRNA alignment and visualize Genomes with High Capacity, High Speed Assembler.
2. QSeq is fully integrated with ArrayStar, enabling you to take advantage of its powerful visualization and analytical tools, including, using Gene Ontology (GO) annotations for ontology comparisons and gene characterization.
3. Using QSeq, researchers can select gene sets and export associated reads through the rest of the DNASTAR software pipeline for sequence assembly, alignment, and detailed analysis. |
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Citations | |
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Year of publication | Not available |
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Rank by usage frequency | 100 |
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Comments | |
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Function | Alignment/Mapping, Visualization, ChIP seq analysis, RNA seq analysis |
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Category | Downloadable |
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License | GNU GPL V3 |
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Status | |
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Input file format | SAM, BAM, GFF, BED |
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Output file format | |
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Operating system |
Windows 7, Windows Vista, Windows XP SP2, Mac OS X 10.6 with Parallels Desktop |
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Operating language | |
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Platform | Roche NimbleGen, Illumina/Solexa,
Roche 454, ABI SOLiD, Helicos, Sanger |
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Maintained by | Oregon State University |
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Downloadable file format | |
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Submission file format | |
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